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MAESTRO

MAESTRO is free for non-commercial use. By using this software you accept the terms of the License Agreement. Please do not hesitate to contact us in case of any questions.

MAESTRO 1.1

Linux 64bit     Linux 32bit     Windows 64bit     Windows 32bit     OS X 64bit

New features in version 1.1: multithreaded mutation scanning (optional). negative residue identifiers are supported.

Alternative Ensembles

MAESTRO was trained on the data sets SP4 and MP for stability change predictions and on the data set SP3 for the prediction of disulfide bonds.  For more details about the data sets see here.  However,  feel free to download the following configurations,  if you prefer MAESTRO trained on one of  the other  alternative data sets.

 
Configuration Configuration File Ensemble Folder Data Sets Description
Default  configDef.xml ensembleDEF  SP4+MP,SP3 For the prediction of stability changes upon mutations, MAESTRO was trained on the data sets SP4 and MP. The disulfide bond prediction is based on the training set SP3.
SP1  configSP1.xml ensembleSP1  SP1 For all purposes (stability change and SS-bond prediction), MAESTRO was trained on the SP1 data set.
SP3  configSP3.xml ensembleSP3  SP3 For all purposes (stability change and SS-bond prediction), MAESTRO was trained on the SP3 data set.
SP4  configSP4.xml ensembleSP4  SP4 For all purposes (stability change and SS-bond prediction), MAESTRO was trained on the SP4 data set.
MP  configMP.xml ensembleMP  MP For all purposes (stability change and SS-bond prediction), MAESTRO was trained on the MP data set.
Score  configScore.xml  – MAESTRO score configuration. Scores are utilized for all purposes.
Score nonlocal  configScoreNonLocal.xml  – MAESTRO nonlocal-score configuration. Like the configuration before, but local pair interactions (sequence distance < 10) are omitted.

For the use of an alternative ensemble, simply download one of the configurations, unzip the file and copy the containing configuration file as well as the ensemble folder to MAESTRO’s installation path. After that you can use the new ensemble by calling MAESTRO with the alternative configuration file.  For example:

./maestro configSP1.xml 1BV1.pdb1 --evalmut="I91{X}" --bu